This method leaves the binary largely untouched. The code logic remains intact. The software thinks it is doing exactly what it was programmed to do: verifying a signature. Because the signature is cryptographically valid (signed by the key the software now trusts), the software runs without throwing integrity errors.
If you are manually installing the certificate provided in an R2R package, the standard process is:
: If a malicious actor were to gain access to the private key used to create that certificate, they could theoretically sign malware that your computer would automatically trust. Recommendation
This is a deep-dive blog post draft focused on the technical significance, implementation details, and broader industry implications of a "Team R2R Root Certificate" victory.